MmuEX0004913 @ mm10
Exon Skipping
Gene
ENSMUSG00000069601 | Ank3
Description
ankyrin 3, epithelial [Source:MGI Symbol;Acc:MGI:88026]
Coordinates
chr10:69877830-69882558:+
Coord C1 exon
chr10:69877830-69877928
Coord A exon
chr10:69879893-69879991
Coord C2 exon
chr10:69882361-69882558
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTTCCACTTACGTTCCCCAGAGA
3' ss Score
7.18
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
TCGGGCCTTACCCCAATCCATGTTGCTGCCTTCATGGGACATGTAAATATCGTGTCACAGCTAATGCATCATGGAGCCTCCCCAAACACCACCAATGTG
Seq A exon
AGAGGAGAGACGGCATTGCATATGGCGGCTCGGTCCGGACAAGCAGAAGTGGTGCGGTATCTGGTCCAAGATGGGGCTCAGGTAGAAGCAAAAGCTAAG
Seq C2 exon
GATGACCAGACTCCACTCCACATCTCAGCCCGACTTGGGAAAGCTGACATAGTGCAACAACTGTTACAGCAAGGAGCATCCCCCAATGCAGCAACAACTTCTGGGTACACCCCCCTTCACCTTGCGGCCAGAGAGGGGCATGAGGATGTAGCTGCGTTCCTCCTGGATCATGGAGCATCTTTATCCATAACAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069601-'45-51,'45-49,46-51
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.303 A=0.273 C2=0.242
Domain overlap (PFAM):
C1:
PF136371=Ank_4=PU(57.4=93.9)
A:
PF136371=Ank_4=PD(38.9=63.6),PF127962=Ank_2=PU(8.3=18.2)
C2:
PF127962=Ank_2=PD(88.9=97.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCCCAATCCATGTTGCTGC
R:
GGGGATGCTCCTTGCTGTAAC
Band lengths:
174-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types