BtaEX6105140 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019052 | ANK3
Description
Bos taurus ankyrin 3, node of Ranvier (ankyrin G) (ANK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001105620]
Coordinates
chr28:15982745-15998593:-
Coord C1 exon
chr28:15998495-15998593
Coord A exon
chr28:15995992-15996090
Coord C2 exon
chr28:15982745-15982942
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTTTGGCTCCTGTTCCCCAGAGA
3' ss Score
7.83
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
TCGGGCCTTACCCCAATCCATGTTGCTGCCTTCATGGGGCATGTAAATATCGTGTCACAATTAATGCATCATGGAGCCTCACCAAACACCACTAACGTG
Seq A exon
AGAGGAGAGACAGCCCTGCACATGGCAGCTCGGTCCGGTCAGGCTGAAGTCGTGCGGTATCTGGTGCAAGACGGAGCTCAGGTAGAAGCTAAAGCTAAG
Seq C2 exon
GATGACCAAACCCCTCTCCACATTTCTGCCCGACTGGGGAAAGCGGATATAGTACAGCAGTTGTTGCAGCAAGGAGCATCTCCAAATGCAGCGACAACTTCGGGGTACACCCCGCTGCACCTTGCAGCGCGAGAGGGACACGAAGACGTCGCAGCTTTCCTTTTGGATCATGGCGCATCTTTAGCTATAACAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019052-'11-15,'11-12,12-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.303 A=0.273 C2=0.242
Domain overlap (PFAM):
C1:
PF136371=Ank_4=PU(57.4=93.9)
A:
PF136371=Ank_4=PD(38.9=63.6),PF127962=Ank_2=PU(8.3=18.2)
C2:
PF127962=Ank_2=PD(88.9=97.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCCCAATCCATGTTGCTGC
R:
ATGCTCCTTGCTGCAACAACT
Band lengths:
170-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]