GgaEX1065942 @ galGal4
Exon Skipping
Gene
ENSGALG00000003135 | chAnk3
Description
ankyrin 3, node of Ranvier (ankyrin G) [Source:RefSeq peptide;Acc:NP_001264026]
Coordinates
chr6:8412170-8415474:+
Coord C1 exon
chr6:8412170-8412268
Coord A exon
chr6:8413520-8413618
Coord C2 exon
chr6:8415277-8415474
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTCTGCTGTTTCTAGAGA
3' ss Score
8.31
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
TCGGGCCTAACTCCAATCCATGTTGCTGCCTTCATGGGACATGTAAATATTGTATCACAGTTAATGCATCATGGAGCATCACCCAATACTACCAATGTG
Seq A exon
AGAGGAGAAACTGCACTGCACATGGCTGCTAGAGCTGGCCAAACAGAGGTTGTTCGATACCTAGTACAAAATGGAGCTCAGGTGGAGGCTAAAGCTAAG
Seq C2 exon
GATGACCAAACGCCGCTGCACATTTCTGCTCGACTGGGCAAAGCAGATATAGTGCAGCAGCTGTTACAGCAAGGAGCATCTCCAAATGCAGCTACAACTTCTGGCTATACGCCCTTGCACCTTTCTGCTCGAGAAGGCCATGAAGATGTAGCTTCTGTTCTTTTGGAGCATGGCGCATCTTTAGCTATTATTACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135-'34-19,'34-18,35-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.303 A=0.273 C2=0.273
Domain overlap (PFAM):
C1:
PF136371=Ank_4=PU(57.4=93.9)
A:
PF136371=Ank_4=PD(38.9=63.6),PF127962=Ank_2=PU(7.0=15.2)
C2:
PF127962=Ank_2=PD(90.1=97.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCATGGAGCATCACCCAA
R:
CTTCATGGCCTTCTCGAGCAG
Band lengths:
179-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]