DreEX6053830 @ danRer10
Exon Skipping
Gene
ENSDARG00000061736 | ank3a
Description
ankyrin 3a [Source:ZFIN;Acc:ZDB-GENE-060621-1]
Coordinates
chr17:20760342-20762240:-
Coord C1 exon
chr17:20762142-20762240
Coord A exon
chr17:20760754-20760852
Coord C2 exon
chr17:20760342-20760539
Length
99 bp
Sequences
Splice sites
3' ss Seq
AATTCTGTGTTGTGTTGTAGAGA
3' ss Score
8.33
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
Exon sequences
Seq C1 exon
TCAGGGTTGACGCCCATCCATGTTGCTGCATTCATGGGGCATGAAAACATAGTGAAGCAGCTCACGCATCACGGAGCCTCACCCAACACCACAAATGTG
Seq A exon
AGAGGGGAAACAGCTTTGCACATGGCAGCAAGAGCCGGCCAGATTGATGTTGTCAGATACCTGCTACAGAATGGTGCTAAAGTGGACATCAAAGCCAAG
Seq C2 exon
GATGACCAAACAGCTCTGCATATAGCCAGTCGTCTGGGGAAGCTGGAGATTGTACAGCAGTTGCTTCAGAAGGGGGCTTTACCTAATGCTGCCACCACCTCTGGCTACACCCCTCTGCACCTTTCTGCCCGTGAGGGTCATCAGGAGATAGCAGCTCTTCTGCTGGAGCAGGGGTCTTCTCTCTCTGCAGCCACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061736-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.394 A=0.152 C2=0.045
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(45.7=100)
A:
PF127962=Ank_2=PD(44.3=93.9)
C2:
PF0002325=Ank=WD(100=50.0),PF0002325=Ank=WD(100=50.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATAGTGAAGCAGCTCACGCA
R:
AGAAAGGTGCAGAGGGGTGTA
Band lengths:
178-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]