RnoEX6062481 @ rn6
Exon Skipping
Gene
ENSRNOG00000053288 | Ank3
Description
ankyrin 3 [Source:RGD Symbol;Acc:620157]
Coordinates
chr20:20328259-20332645:+
Coord C1 exon
chr20:20328259-20328357
Coord A exon
chr20:20330144-20330242
Coord C2 exon
chr20:20332448-20332645
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTTCACCTTACATTCCCCAGAGA
3' ss Score
6.51
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
TCGGGCCTTACCCCAATCCATGTCGCTGCCTTCATGGGACATGTAAATATCGTGTCACAGCTAATGCATCATGGAGCCTCCCCAAACACCACCAACGTG
Seq A exon
AGAGGAGAAACAGCATTGCATATGGCGGCTCGGTCGGGGCAAGCAGAAGTGGTGCGGTATTTGGTACAAGATGGAGCTCAGGTAGAAGCAAAAGCTAAG
Seq C2 exon
GATGACCAGACCCCACTCCACATTTCAGCCCGACTCGGGAAGGCTGACATAGTGCAACAACTGTTACAGCAAGGAGCGTCCCCGAATGCAGCAACAACTTCCGGGTACACCCCCCTTCACCTTTCGGCCAGAGAGGGGCATGAGGATGTAGCTGCCTTCCTTCTGGACCATGGAGCATCTTTATCCATAACAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053288-'20-27,'20-25,21-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.299 A=0.275 C2=0.253
Domain overlap (PFAM):
C1:
PF136371=Ank_4=PU(57.4=93.9)
A:
PF136371=Ank_4=PD(38.9=63.6),PF127962=Ank_2=PU(7.0=15.2)
C2:
PF127962=Ank_2=PD(90.1=97.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCATGGAGCCTCCCCAAAC
R:
ACATCCTCATGCCCCTCTCTG
Band lengths:
182-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]