HsaEX0004149 @ hg19
Exon Skipping
Gene
ENSG00000151150 | ANK3
Description
ankyrin 3, node of Ranvier (ankyrin G) [Source:HGNC Symbol;Acc:494]
Coordinates
chr10:61958098-61962858:-
Coord C1 exon
chr10:61962760-61962858
Coord A exon
chr10:61959887-61959985
Coord C2 exon
chr10:61958098-61958295
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTTTGGCTCATGTTCCCCAGAGA
3' ss Score
6.66
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
TCGGGCCTTACCCCAATCCATGTTGCTGCCTTCATGGGGCATGTAAATATTGTATCACAACTAATGCATCATGGAGCCTCACCAAACACCACCAATGTG
Seq A exon
AGAGGAGAAACAGCACTGCACATGGCAGCTCGCTCCGGCCAAGCTGAAGTTGTGCGGTATCTGGTACAAGACGGAGCTCAGGTAGAAGCTAAAGCTAAG
Seq C2 exon
GATGACCAAACACCACTCCACATTTCAGCCCGACTGGGGAAAGCAGACATAGTACAACAGCTGTTGCAGCAAGGGGCATCTCCAAATGCAGCCACAACTTCTGGGTACACCCCACTTCACCTTTCCGCCCGAGAGGGGCATGAGGATGTGGCCGCGTTCCTTTTGGATCATGGAGCGTCTTTATCTATAACAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151150_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.283 A=0.274 C2=0.258
Domain overlap (PFAM):
C1:
PF136371=Ank_4=PU(57.4=93.9)
A:
PF136371=Ank_4=PD(38.9=63.6),PF127962=Ank_2=PU(8.3=18.2)
C2:
PF127962=Ank_2=PD(88.9=97.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCCCAATCCATGTTGCTGC
R:
ATTTGGAGATGCCCCTTGCTG
Band lengths:
178-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)