DreEX0014319 @ danRer10
Exon Skipping
Gene
ENSDARG00000017748 | arhgap29b
Description
Rho GTPase activating protein 29b [Source:ZFIN;Acc:ZDB-GENE-031010-44]
Coordinates
chr2:15459828-15485805:+
Coord C1 exon
chr2:15459828-15459928
Coord A exon
chr2:15465562-15465912
Coord C2 exon
chr2:15485662-15485805
Length
351 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCGTCCCCCACAGTGC
3' ss Score
11.66
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CAGCGATCTGTGTGCGAGCGTCTTTTAGAGATCATTTGATGGATTTACAAAGGATTTACCTTCATGATTCTTCAGTATGACGATCGTCACGAGCCATTCAA
Seq A exon
TGCCCTCAGCTCTCCACTGGCAGGAGAGTTTTCGGATCTGCGGCTGAAGCGACTTCGTAACGGCAGAAGCTGCTGCTGGAATGTTCCGTCAGGGCAGCAACAGTGGGAATAAACGCATGACAAGCGGTGCTCGTCTCTCCCAGCCCATCATCCCTTTGTCCCTGCCTACCGCATCCTCCAAAACGCTAGAAATGGGCCGCAGCTCTAAGACAAACCCCCTCAACGCTATGGGCCTGGACCACAATATCGCCACCTCGGGAGGGGATCCCGAATACATCATGCAACTGGTCAATGATGTGCGCAAGTTTTCTGATGTGCTGCTGAGCCTTAAAGAGGCTTTTCATTCCAAAG
Seq C2 exon
AAAGTCAAGAGTGCTCGCAGCACGTGGTGAATGAGCGTCTTGGGGAGTTGGTCCACGTGTTGAAGGCCGTCATTGGCAAACACCAGGCACTGAACTCATCCGAAATCCTTGGTGCCGCGGGGACTGTTATTGCTAAAGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017748-'0-2,'0-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.451 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTGTGTGCGAGCGTCTTT
R:
TGACTTTAGCAATAACAGTCCCCG
Band lengths:
238-589
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]