RnoEX0011074 @ rn6
Exon Skipping
Gene
ENSRNOG00000012563 | Arhgap29
Description
Rho GTPase activating protein 29 [Source:RGD Symbol;Acc:1306185]
Coordinates
chr2:225552148-225578515:+
Coord C1 exon
chr2:225552148-225552237
Coord A exon
chr2:225570720-225570956
Coord C2 exon
chr2:225578381-225578515
Length
237 bp
Sequences
Splice sites
3' ss Seq
TTGTTTCTTGTCCCCTTAAGGAT
3' ss Score
8.83
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
CCGTGGGGGATGGGGACAGCGAGCTCCAGCCCGCTGAGGGGGCGGTGGCCGTGAGTGATAGGCGTCCGGGTCGCGGGATGGAGCCCCACG
Seq A exon
GATTTCAGTTTTTCTGACTGTTAAATGAGAGGATGATTGCTCACAAACAGAAAAAGGCAAAGAAAAAACGTGTTTGGGCATCAGGCCAACTCTCTGCCGCTATTACAACTTCTGAAATGGGGCTCAAGTCCGTAAGTTCCAACTCCATTTTTGATCCGGAATACATCAAGGAGCTGGTGAATGATATCAGGAAGTTCTCCCATGTGTTACTATATTTGAAAGAAGCTATTCTTTCAG
Seq C2 exon
ACTGTTTTAAAGAAGTCATTCATATCCGTCTGGATGAACTTCTTCATGTTTTAAAGTCTGTAATGAGTAAGCATCAGAACCTCAATTCTGTAGACCTTCAGAACGCTGCAGAAACGCTCGCTTCGAAAGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012563_MULTIEX1-1/3=C1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.041
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGACAGCGAGCTCCAG
R:
TTCACTTTCGAAGCGAGCGTT
Band lengths:
212-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]