DreEX6095537 @ danRer10
Exon Skipping
Gene
ENSDARG00000026329 | arhgap29a
Description
Rho GTPase activating protein 29a [Source:ZFIN;Acc:ZDB-GENE-030131-9510]
Coordinates
chr24:28364388-28430716:+
Coord C1 exon
chr24:28364388-28364489
Coord A exon
chr24:28369156-28369532
Coord C2 exon
chr24:28430573-28430716
Length
377 bp
Sequences
Splice sites
3' ss Seq
TGCGTCCATTGTGCACACAGGAC
3' ss Score
7.79
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CGGTTTTCGTGACTGAAGGGACCGGGGATTTAACGGTGTTTCGGATATATTTTGGCTTCAAGTGTATATGCGCAATTGCAATGATCCAGATGTGCTTTTTAA
Seq A exon
GACCCGCTGTCATTGGTAAGGAAACTCTTGGAATTTGAGAGTCTCCAGGGATCGTCGTTCTGGGACCTTTTTCAAGCTGGCCGCGGCTGGGATGTTTGCTGCTGGGATGCTGCAGCAGAGCAGCGGAGGACTAAACAAGCGATCGCTGGGAATGGCACGGATTCCCGATTCTCGCTTTTTTCCTCTTTCCTCGGGCTCGGGGTCGTGGGGTTTGAGCCGGACTGTGAAGAGCGGCTCTTTGAGCTCCATCAGCTCAGGGTCGGACAATATGGACAATATGATGGGAGCCGATCCCGACTACATCATGCAACTGGTCAACGATGTCCGGAGGTTTGCAGATGTACTTCTCCACCTTAAGGAAGCGTTTAACACCAAAG
Seq C2 exon
ATCACCAGGACTGTCTGCATCAGGTGGTTCACGAGCGTCTGGGAGAGCTGCTGCGTGTATTAAAAGCAGTGATTTCCAAACACCACTCCCTGAATTCAGTGGAGATCCTCAGCGCAGCAGGGACCCTCATCGCAAAGGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026329-'0-3,'0-0,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.042 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTTTTCGTGACTGAAGGGA
R:
CTTTGACCTTTGCGATGAGGGT
Band lengths:
246-623
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]