GgaEX6044180 @ galGal4
Exon Skipping
Gene
ENSGALG00000005683 | ARHGAP29
Description
rho GTPase-activating protein 29 [Source:RefSeq peptide;Acc:NP_001231811]
Coordinates
chr8:12544481-12568478:+
Coord C1 exon
chr8:12544481-12544562
Coord A exon
chr8:12546367-12546711
Coord C2 exon
chr8:12568335-12568478
Length
345 bp
Sequences
Splice sites
3' ss Seq
TTCCTTCCTCCGTCTTAAAGGGC
3' ss Score
9.04
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GCGAGACGGTGTGCAGGGCCTGCGGCCGTCCGGCTGCTGCCTGCGCTCCGCTTCGCTCCACTGCTCGCCGGTAGCGACTCCG
Seq A exon
GGCTTCATCTCTGGCTGGTCAGTGGACGTTAGGCAATCCTGAATGTTGGCTGTGGGAGCTCTCTAGGCACAGCGGCTGCTGGGATGTTGCGACAGAACGGTGGAAGTAACAAACGTGGTTTGGGATTGGCCCGGCTGTCTACCTCCAACTTCTTCACCATCTCTAATTCAGGAAATTGGGGAATGGGGCGCAGCACCAAGAGCAGCTCTTTGAGCAGCATTAGCTCCAACTCTGACTGCTACGATAATCCTGTCGTGGACCCAGAATACATCATGCAACTGGTGAATGATGTCAGAAAATTTGCAGATGTGCTACTCTACTTGAAGGAAGCCATTTGTTCAGAAG
Seq C2 exon
AAAACCAAGATGGCCTGCATCAAGTAGTACACGAACGCTTAGGAGAGTTGCTGCGCGTTTTAAAAGCGGTGATAAATAAACATCAGACTCTGAACTCTGTTGATATTCTTAGCGCTGCCGGAACAGTTATTGCGAAAGTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005683-'0-7,'0-0,1-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.045 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCGCTTCGCTCCACT
R:
CTTTTACTTTCGCAATAACTGTTCCG
Band lengths:
182-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]