BtaEX6016485 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004190 | ARHGAP29
Description
Bos taurus Rho GTPase activating protein 29 (ARHGAP29), mRNA. [Source:RefSeq mRNA;Acc:NM_001102485]
Coordinates
chr3:49392814-49426983:+
Coord C1 exon
chr3:49392814-49392863
Coord A exon
chr3:49411034-49411270
Coord C2 exon
chr3:49426849-49426983
Length
237 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTCTCCCACTTAAGGAA
3' ss Score
8.67
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GTGAGTGTTGGGCGGGCGTCCGCGTTCGGGACGCGGGATGGAGCGCCGCG
Seq A exon
GAATTCCATTTTTTTGACTGTTATGTGAAAGGATGATTGCTTACAAACAGAAAAAGACAAAGAAAAAACGTGTTTTGTCAACAGGCCAGCTCTCAACTGATGTTACAACTTCTGAGATGGGGCTCAAGTCCATAAATTCCAACGCCATTTTGGATCCTGATTACATCAAGGAGTTGGTGAATGACATCAGGAAGTTCTCCCATATGTTACTGTATTTGAAGGAAGCTATTCTTTCAG
Seq C2 exon
AGTGTTTTAAAGAAGTCATTCATATACGTCTTGATGAACTTCTTCGTGTTTTAAAGTCTGTAATGAATAAACATCAGAACCTCAATTCTGTCGATCTTCAAAATGCTGCAGAAATGCTTATCGCAAAAGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004190-'0-4,'0-1,6-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]