HsaEX0005481 @ hg19
Exon Skipping
Gene
ENSG00000137962 | ARHGAP29
Description
Rho GTPase activating protein 29 [Source:HGNC Symbol;Acc:30207]
Coordinates
chr1:94685814-94703121:-
Coord C1 exon
chr1:94702971-94703121
Coord A exon
chr1:94696963-94697199
Coord C2 exon
chr1:94685814-94685948
Length
237 bp
Sequences
Splice sites
3' ss Seq
TTGTTTCTTGCCCCCTTAAGGAT
3' ss Score
7.91
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GCTGTGGCTGCGGCTGCGGCTGCGGCTGAGATTTGGCCGGGCGTCCGCAGGCCGTGGGGGATGGGGGCAGCGAGCTCCAGCCCTCGGCGGTGGCGGCGGCCGTAGGTGTGGGGCGGGCGTCCGCGTCCGGCACGCGAGATGGAGCGCCGTG
Seq A exon
GATTTCAGTTTTTCTGACTGTTACATGAAAGGATGATTGCTCACAAACAGAAAAAGACAAAGAAAAAACGTGCTTGGGCATCAGGTCAACTCTCTACTGATATTACAACTTCTGAAATGGGGCTCAAGTCCTTAAGTTCCAACTCTATTTTTGATCCGGATTACATCAAGGAGTTGGTGAATGATATCAGGAAGTTCTCCCACATGTTACTATATTTGAAAGAAGCCATATTTTCAG
Seq C2 exon
ACTGTTTTAAAGAAGTTATTCATATACGTCTAGAGGAACTGCTCCGTGTTTTAAAGTCTATAATGAATAAACATCAGAACCTCAATTCTGTTGATCTTCAAAATGCTGCAGAAATGCTCACTGCAAAAGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137962-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.058 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGGCTGAGATTTGGCC
R:
TCTGCAGCATTTTGAAGATCAACA
Band lengths:
244-481
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)