MmuEX0005855 @ mm10
Exon Skipping
Gene
ENSMUSG00000039831 | Arhgap29
Description
Rho GTPase activating protein 29 [Source:MGI Symbol;Acc:MGI:2443818]
Coordinates
chr3:121967829-121981949:+
Coord C1 exon
chr3:121967829-121967957
Coord A exon
chr3:121973879-121974115
Coord C2 exon
chr3:121981815-121981949
Length
237 bp
Sequences
Splice sites
3' ss Seq
TTGTTTCTTGTCCCCTTAAGGAT
3' ss Score
8.83
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
CAGTGCTGGCTCGGCCCGGCATGGAGGATGGAGGCAGCAAGTTTGAGCCCTAGGCGGCACGAGCCGCCGCCGCCAGGCTGTGGGCGTTCATCTGAAGTCGGCACGGGGGATACAGGATGGAGCCCCACG
Seq A exon
GATTTCAGTTTTTCTGACTGTTAAATGAGAGGATGATTGCTCACAAACAGAAAAAGGCAAAGAAAAAGCGTGTTTGGGCATCAGGCCAACCTTCTGCTGCTATTACAACTTCTGAAATGGGGCTCAAGTCCGTAAGTTCCAGCTCCAGTTTTGATCCGGAGTACATCAAGGAGCTGGTGAATGATGTCAGGAAGTTCTCCCATATGTTGCTATATTTGAAAGAAGCTATTCTTTCAG
Seq C2 exon
ACTGTTTTAAAGAAGTCATTCATATCCGTCTGGATGAGCTTCTCCGTGTTTTAAAGTCGATATTGAGCAAGCATCAGAACCTCAGCTCCGTAGATCTTCAGAGCGCTGCAGAGGTGCTCACTGCAAAAGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039831-'5-10,'5-4,8-10
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.011 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGGCATGGAGGATGGA
R:
CAGTGAGCACCTCTGCAGC
Band lengths:
238-475
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types