DreEX0015177 @ danRer10
Exon Skipping
Gene
ENSDARG00000007125 | asb6
Description
ankyrin repeat and SOCS box containing 6 [Source:ZFIN;Acc:ZDB-GENE-050522-338]
Coordinates
chr8:6864456-6867154:-
Coord C1 exon
chr8:6866982-6867154
Coord A exon
chr8:6866784-6866890
Coord C2 exon
chr8:6864456-6864564
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTTTGTCTTATTGTTTTCAGACC
3' ss Score
9.21
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
GCAAGATGAAGAGGAAAGCGTGTCTGTGGCTCTGGCCGAGCTGCTGGACAGAGAGGCGCAGTCTCCCGTCTTCATGCAGGGAATCAGTTACTCTCTGTTTCGAGTGGCTGAGTTTGGTTTAGTGAGCGCCGCACAGGTGCTCCTACGATACGGAGCTGATCTCAACTTTGAGG
Seq A exon
ACCCTGTATCGTACTACAACCCTTTACACATCGCAGTACTGAGAAACAAACCAGACATGGTGCGAATGTTGATCTCGAGTGGAGCTGATATTGACAAAAGAGACAGG
Seq C2 exon
ATTCATGAAAGCAGCCCTATTGACTTGGCCAGTGAGGAGGCTGATAAGCTGCCGTGTCTCCGTGTGCTTCTGGATTTTGGTGCTGATGTGAATGCAAAAGACAAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007125-'7-9,'7-8,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=0.000 C2=0.054
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(61.1=93.2)
A:
PF127962=Ank_2=PD(37.8=94.4),PF127962=Ank_2=PU(6.6=11.1)
C2:
PF127962=Ank_2=FE(59.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGGAAAGCGTGTCTGTGG
R:
CCAAAATCCAGAAGCACACGG
Band lengths:
245-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]