MmuEX6100297 @ mm9
Exon Skipping
Gene
ENSMUSG00000039483 | Asb6
Description
ankyrin repeat and SOCS box-containing 6 [Source:MGI Symbol;Acc:MGI:1919573]
Coordinates
chr2:30680972-30682618:-
Coord C1 exon
chr2:30682443-30682618
Coord A exon
chr2:30681175-30681281
Coord C2 exon
chr2:30680972-30681080
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTGAACTTCTTTGCCTTCAGACC
3' ss Score
8.55
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
TTCTGCTTCCAGCGAGGAGAGCCGGATCCTGGTCCTCACGGAGCTGCTGGAGCAGAAGGCTCACTCTCCATTCTACCAGGAAGGCGTGAGCAATGCGTTGCTGAAGATGGCTGAGCTGGGCCTGACCCGGGCAGCTGCTGTCCTTCTGCAGAGTGGGGCCAACCTCAATTTCGAAG
Seq A exon
ACCCTGTTACCTACTACACAGCCCTGCACATTGCTGTCCTGAGAAACCAGCCTGACATGGTTGAGCTGCTGGTGCGCCACGGGGCTGACATCAACAGGAGGGACCGG
Seq C2 exon
ATCCATGAGAGCAGCCCCTTGGATCTGGCCAGCGAGGAACCCGAACGCCTGCCCTGCCTGCAGCGCCTCTTGGATCTTGGAGCAGATGTCAATGCAGCTGACAAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039483-'2-3,'2-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.000 C2=0.189
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(62.0=95.0)
A:
PF127962=Ank_2=PD(37.0=94.4),PF127962=Ank_2=PU(0.1=0.0)
C2:
PF127962=Ank_2=FE(41.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCCTGGTCCTCACGGAG
R:
AGCTGCATTGACATCTGCTCC
Band lengths:
252-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: