RnoEX6016335 @ rn6
Exon Skipping
Gene
ENSRNOG00000024786 | Asb6
Description
ankyrin repeat and SOCS box-containing 6 [Source:RGD Symbol;Acc:1308445]
Coordinates
chr3:9661861-9663115:-
Coord C1 exon
chr3:9662940-9663115
Coord A exon
chr3:9662060-9662166
Coord C2 exon
chr3:9661861-9661969
Length
107 bp
Sequences
Splice sites
3' ss Seq
CCGAACTTCCTTGCCTTCAGACC
3' ss Score
7.42
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
TTACGCTTCCAGTGAGGAGAGCCGGATCCTGGTCCTTACGGAGCTGCTGGAGCAGAAGGCCCACTCTCCTTTCTACCAGGAAGGTGTGAGCAATGCTCTGCTGAAGATGGCCGAGCTGGGCCTGACCCGGGCAGCTGCGGTCCTCCTGCAGAGTGGGGCCAACCTCAACTTTGAAG
Seq A exon
ACCCTGTCACCTACTACACAGCCCTGCACATTGCTGTCCTGAGAAACCAGCCTGACATGGTGGAGCTGCTGGTGCGCCACGGGGCTGATATCAACAGGAGGGACCGG
Seq C2 exon
ATCCACGAGAGCAGCCCCTTGGATCTGGCCAGTGAGGAACCTGAACGCCTGCCCTGCCTGCAGCGCCTCTTGGATCTTGGAGCAGATGTCAACGCAGCAGACAAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024786-'4-3,'4-2,7-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.189
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(39.7=95.8)
A:
PF127962=Ank_2=PD(58.6=94.4),PF127962=Ank_2=PU(1.3=2.8)
C2:
PF127962=Ank_2=FE(46.8=100)
Main Skipping Isoform:
ENSRNOT00000034927fB1544
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGATCCTGGTCCTTACGGAG
R:
GCGTTGACATCTGCTCCAAGA
Band lengths:
249-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]