HsaEX6063420 @ hg38
Exon Skipping
Gene
ENSG00000148331 | ASB6
Description
ankyrin repeat and SOCS box containing 6 [Source:HGNC Symbol;Acc:HGNC:17181]
Coordinates
chr9:129639202-129640722:-
Coord C1 exon
chr9:129640541-129640722
Coord A exon
chr9:129639402-129639508
Coord C2 exon
chr9:129639202-129639310
Length
107 bp
Sequences
Splice sites
3' ss Seq
AGCTGTGTCTGCACCTTCAGACC
3' ss Score
6.8
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GCCCAGTTATGTCGCCAGCGAGGAGAGCCGAATCCTTGTTCTCACTGAGCTGCTGGAGAGGAAAGCCCACTCTCCCTTTTACCAGGAAGGCGTGAGCAACGCCCTGCTCAAGATGGCTGAGCTGGGGCTGACGCGGGCGGCCGACGTTCTCTTGCGGCATGGGGCCAATCTCAACTTTGAAG
Seq A exon
ACCCAGTCACCTACTACACGGCCTTGCACATCGCCGTCCTGCGGAACCAGCCGGACATGGTGGAGCTGCTGGTGCATCACGGGGCCGACGTTAATCGGAGGGACCGG
Seq C2 exon
ATCCACGAGAGTAGCCCCTTGGACCTGGCCAGCGAGGAGCCTGAGCGCCTGCCCTGCCTGCAGCGCCTCCTGGACCTTGGAGCTGATGTCAATGCCGCTGACAAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148331-'5-3,'5-2,9-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.021 C2=0.234
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(63.2=96.8)
A:
PF127962=Ank_2=PD(35.8=94.4),PF127962=Ank_2=PU(0.1=0.0)
C2:
PF127962=Ank_2=FE(48.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTCACTGAGCTGCTGGAG
R:
CGGCATTGACATCAGCTCCAA
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains