MmuEX6100297 @ mm10
Exon Skipping
Gene
ENSMUSG00000039483 | Asb6
Description
ankyrin repeat and SOCS box-containing 6 [Source:MGI Symbol;Acc:MGI:1919573]
Coordinates
chr2:30824641-30827098:-
Coord C1 exon
chr2:30826923-30827098
Coord A exon
chr2:30825655-30825761
Coord C2 exon
chr2:30824641-30825560
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTGAACTTCTTTGCCTTCAGACC
3' ss Score
8.55
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
TTCTGCTTCCAGCGAGGAGAGCCGGATCCTGGTCCTCACGGAGCTGCTGGAGCAGAAGGCTCACTCTCCATTCTACCAGGAAGGCGTGAGCAATGCGTTGCTGAAGATGGCTGAGCTGGGCCTGACCCGGGCAGCTGCTGTCCTTCTGCAGAGTGGGGCCAACCTCAATTTCGAAG
Seq A exon
ACCCTGTTACCTACTACACAGCCCTGCACATTGCTGTCCTGAGAAACCAGCCTGACATGGTTGAGCTGCTGGTGCGCCACGGGGCTGACATCAACAGGAGGGACCGG
Seq C2 exon
ATCCATGAGAGCAGCCCCTTGGATCTGGCCAGCGAGGAACCCGAACGCCTGCCCTGCCTGCAGCGCCTCTTGGATCTTGGAGCAGATGTCAATGCAGCTGACAAGAATGGTAAGAGAGACGCTGAGAGGTTAAGAGCACTGCTGCGGGCTGGAGAGATGGCTCAACGGGTAAAAGCACTGACTGCTCTTCTGAAGGTCATGAGTTCAAATCCCAGCAACCATATGGTGGCTCACAACCACCCGTAACAAGATCTGATGCCCTCTTCTGGTGTGTCTTAAAAAATCTTAAAAAAAGAGCACTGCTGATCTTGCAGAGGATCCGGCTCAGTTCCCAGCACCCACAGGGCAGCTCACAACTGTCTGTAAATGTAGTGTCAGGGGATCTCGAGACCTCATAGCGCACACAAACATACATCATGCAGGCAAAGCACTCATACATAAAATAATAAAACTTAAGTGCTGGGGTGGAGGGCTGGCCATCCCTGGGGCTGGACACCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039483-'5-6,'5-5,9-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.000 C2=0.104
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(62.0=95.0)
A:
PF127962=Ank_2=PD(37.0=94.4),PF127962=Ank_2=PU(0.1=0.0)
C2:
PF127962=Ank_2=FE(33.7=100)
Main Skipping Isoform:
ENSMUST00000041726fB6239
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGAAGATGGCTGAGCTG
R:
AGTGCTTTTACCCGTTGAGCC
Band lengths:
258-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types