GgaEX1009357 @ galGal4
Exon Skipping
Gene
ENSGALG00000004378 | ASB6
Description
ankyrin repeat and SOCS box protein 6 [Source:RefSeq peptide;Acc:NP_001025859]
Coordinates
chr17:5649549-5650746:-
Coord C1 exon
chr17:5650565-5650746
Coord A exon
chr17:5650070-5650176
Coord C2 exon
chr17:5649549-5649657
Length
107 bp
Sequences
Splice sites
3' ss Seq
CCACATGTTTTTGTCCTCAGACC
3' ss Score
9.64
5' ss Seq
CGGGTACAG
5' ss Score
4.22
Exon sequences
Seq C1 exon
CCATGCCTGCTTGGGCAGCAATGGAAGCCAGCTCTCAGCAATGAGACAAGTCTTGGAGAGGGAAGCCCACTCCCCATTCTACCAGGAAGGTGTGAGCTATACTCTGCTGAAGGTTACTGAGCTGGGGCTTGTCGAGGCTGCAGAAGTACTCCTGGAGTTTGGTGCAGACCTCAGCTTTGAAG
Seq A exon
ACCCGGTTACCTACTACACCCCGCTGCACATTGCAGTGCTTCGCAACCAGCCTGACATGGTGGAGCTCCTGGCACGCCACGGGGCCGACATCAACCGCAGAGACCGG
Seq C2 exon
ATCCATGAGAGCAGTCCCCTTGATCTGGCCAGTGAGGAGCCCGAGCGGCTGCCATGCCTCCAGAGGCTGCTTCAGCTTGGGGCCGATGTCAACGCAGCTGACAAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004378-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.000 C2=0.135
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(62.2=100)
A:
PF127962=Ank_2=PD(34.7=94.4),PF127962=Ank_2=PU(0.1=0.0)
C2:
PF127962=Ank_2=FE(46.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCTTGGAGAGGGAAGCCC
R:
CAGTTTTGTCAGCTGCGTTGA
Band lengths:
244-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]