DreEX0015458 @ danRer10
Exon Skipping
Gene
ENSDARG00000055481 | atf7b
Description
activating transcription factor 7b [Source:ZFIN;Acc:ZDB-GENE-030131-3028]
Coordinates
chr6:39620847-39621582:-
Coord C1 exon
chr6:39621463-39621582
Coord A exon
chr6:39621181-39621276
Coord C2 exon
chr6:39620847-39621035
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGGGATCTGTCTCCATCTAGAGG
3' ss Score
7.68
5' ss Seq
CAGGTGCTC
5' ss Score
3.6
Exon sequences
Seq C1 exon
CTTGCCAGATCATCAAACACAGTGCCCAATATCCCAGGGATTCCAGGCCCTCCTATTGGCGGAAGCAGCAGCGGCTCCTCCTCTCCGTCTGGATACAGTACACACTCTGATGCCAAGACG
Seq A exon
AGGCTAAAAGCAGCACTATCTCAGCCGAGTCCTAGTGGACCAGCACCAATTCAAAAAACTGATCACACTGAGACACCATCACCTGCTCAACCACAG
Seq C2 exon
GTATCTCCCGCTCCTCCAAAAGGTGGACGCAGACGCCGCGGGGCTGATATTGAGCCGGATGAACGCCGGCGTCGCTTTCTTGAACGAAACAGAGCTGCTGCTTCTCGTTGCCGGCAGAAGCGGAAAGTGTGGGTCAGTGCTCTGGAGAAGCGTGCGGAGGAGCTGGCTAATGCTAACGTCTCACTTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055481_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.540
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0017016=bZIP_1=PU(70.3=71.4)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATTCCAGGCCCTCCTATT
R:
TTTCGTTCAAGAAAGCGACGC
Band lengths:
173-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]