DreEX0016062 @ danRer10
Exon Skipping
Gene
ENSDARG00000077492 | atp8a2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:ZFIN;Acc:ZDB-GENE-100209-2]
Coordinates
chr24:21317618-21353825:-
Coord C1 exon
chr24:21353586-21353825
Coord A exon
chr24:21323856-21324000
Coord C2 exon
chr24:21317618-21317717
Length
145 bp
Sequences
Splice sites
3' ss Seq
CCATCACTCGAACGGTGCAGGAC
3' ss Score
3.47
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATGCGACGGATCACCAGGATGGCAGAAGCGCGTGCCCGGGCCAGTGCGCGCGCCTGAGGGTGACCCATCATCAATAGGAACTATGTTGCCTCCATCAAACACCGCATCCCTGCGCCTGTGGCCCGCAAACCCCCGCTGAAGCGCGAGTATGCCCACAGCTCGCCCGCGCTGCTGGAAGCTCCACATCGCCGCGCACAATGTATTTCAACCGACGCTCGAAGAAGATCCACAGCGAGGGAG
Seq A exon
GACCCGCGTGCTCGGCCACCGGCTACCGCAAGGCAGAGGATGAGATGTCCGGGACCACATCACAGGCGGACCCGGTAGATGCCACAGCGCGGACCGTGCTGCTCAACAGAGCCCAGACCACCAAATATTGTGACAACCATGTCAG
Seq C2 exon
CACGGCTAAATACGGGATCCTTACTTTCCTGCCTCGGTTCCTGTATGAGCAGATCAGGCGAGCAGCTAATGCTTTTTTCCTTTTCATCGCTCTTATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077492-'0-5,'0-4,6-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.253 A=0.307 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCACCAGGATGGCAGAAGC
R:
AGGATCCCGTATTTAGCCGTG
Band lengths:
253-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]