GgaEX1010122 @ galGal4
Exon Skipping
Gene
ENSGALG00000017106 | ATP8A2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:HGNC Symbol;Acc:HGNC:13533]
Coordinates
chr1:175972298-176021336:+
Coord C1 exon
chr1:175972298-175972376
Coord A exon
chr1:176007936-176008080
Coord C2 exon
chr1:176021237-176021336
Length
145 bp
Sequences
Splice sites
3' ss Seq
ACCGCCCCGCTTTCCCGCAGGAC
3' ss Score
11.44
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
ATGCCGACCAGGGCCGGCCTCGACACGGCGCTGAGGATGTCCCTGCGGCGGAAATCCTCCAAGATCCACTCCTCGGCCG
Seq A exon
GACCGGTGTGTTCCCCCACGGGCTACAAGAAGGCAGATGATGAGATGTCCGGAGCCACGTCCTCGGCGGATCTGGACGAGGCGCCAGCCCGCACCATTTACGTGAACCAGCCCCAGCAGAGCAAGTTCCGCGACAACTGGGTCAG
Seq C2 exon
CACAGCCAAGTACAGTGTGGTGACTTTTCTACCTCGATTCCTGTATGAGCAGATAAGAAAAGCTGCAAATGCGTTCTTCCTCTTCATTGCCTTACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017106-'1-8,'1-3,6-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.265 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CACGGCGCTGAGGATGTC
R:
TGCAGTAAGGCAATGAAGAGGA
Band lengths:
155-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]