MmuEX6041874 @ mm10
Exon Skipping
Gene
ENSMUSG00000021983 | Atp8a2
Description
ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 [Source:MGI Symbol;Acc:MGI:1354710]
Coordinates
chr14:60046661-60087355:-
Coord C1 exon
chr14:60087079-60087355
Coord A exon
chr14:60086582-60086726
Coord C2 exon
chr14:60046661-60046760
Length
145 bp
Sequences
Splice sites
3' ss Seq
CCCGCGCCTCGATTCTGCAGGAC
3' ss Score
9.61
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
TACTGACTCCCTTAGCCTCCTCTCCAATCTCAGGCAGACTAAAGCAGCCCTCCTGCCATTGCCCCTGGGCCAACCTGGCAAGCGCGGGTACCACAAGCTACCCGTGCAGCCAGCTCCATCCCCATCTCGCTCTGGGCTGCCAGACTCCCAGGAGCACTGGGGTCGGGCAAGATGGGGTTACCTTGGGTCCACCCGGCCTCCTGAAGGTCCAGGGCAGCGTGAGGTCTCTGGTAAATCCAGAGCTAGAGAAGCCTGGGAACCTTCGCCACGAATCCAG
Seq A exon
GACCCGTTCGTTCTTCTGCGGGCTACAAGAAGGCAGAGGATGAGATGTCCCGGGCCACGTCTGTTGGAGACCAGCTAGAGGCACCGGCCCGCATAATTTACCTCAACCAATCTCATCTCAACAAATTCTGCGACAACCGGATCAG
Seq C2 exon
TACGGCCAAGTACAGCGTGTTGACATTTCTACCTCGATTCCTGTATGAGCAGATTAGGAGAGCTGCTAACGCCTTCTTCCTCTTCATTGCCTTATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021983-'8-10,'8-8,11-10=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.089 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCACAAGCTACCCGTGC
R:
AGCAGCTCTCCTAATCTGCTCA
Band lengths:
257-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types