RnoEX0013431 @ rn6
Exon Skipping
Gene
ENSRNOG00000008053 | Atp8a2
Description
ATPase phospholipid transporting 8A2 [Source:RGD Symbol;Acc:1594597]
Coordinates
chr15:40352024-40466666:-
Coord C1 exon
chr15:40466566-40466666
Coord A exon
chr15:40390830-40390974
Coord C2 exon
chr15:40352024-40352123
Length
145 bp
Sequences
Splice sites
3' ss Seq
CCTGCGCCTCGTCTCTGCAGGAC
3' ss Score
11.9
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
CCGCCCAGCCTACCAGCCTCGCGCGATGCTGAACGGCGCGGGCCTGGACCAGGCTTTTAAGATGTCGTTACCGCGGAGGGCGAGGATCGGCGCGTCCGTGG
Seq A exon
GACCCGTTCGTTCTTCTGCGGGCTACAAGAAGGCAGAGGATGAGATGTCCCGGGCCACGTCTGTTGGAGACCAGCTAGAGGCACCGGCCCGCATAATTTACCTCAACCAATCTCATCTCAACAAATTCTGCGACAACCGGATCAG
Seq C2 exon
TACGGCCAAGTACAGCGTGTTGACATTTCTACCTCGATTCCTGTATGAGCAGATTAGGAGAGCTGCTAATGCCTTCTTCCTCTTCATTGCCTTACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008053-'2-5,'2-1,11-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.122 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGCCTACCAGCCTCG
R:
AGTAAGGCAATGAAGAGGAAGAAGG
Band lengths:
194-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]