BtaEX6056500 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025428 | ATP8A2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:HGNC Symbol;Acc:HGNC:13533]
Coordinates
chr12:33460001-33463617:+
Coord C1 exon
chr12:33460001-33460077
Coord A exon
chr12:33460325-33460468
Coord C2 exon
chr12:33463518-33463617
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTGGTGCCTTCTTGTCACAGGAC
3' ss Score
9.02
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CTAATTCATGGTCCCTCACCCCTTTCTTGGGCCCTGTGCCCACCCAGAGCCTCTAGGGCAGGGGAGGGGTGGGGTAT
Seq A exon
GACCCGTTCGCTTCTCTGGGGGCTGTCAGAGGTGGAGGAAAAGATGGGCTGGAGGCAATCTCTGCAAGGAGCAGACGTGCCAATGGGCCGCACCATTTACCTCAACGAACCCCTTAGGAACGCTTTCTGCGAAAACTCCATCAG
Seq C2 exon
CACAGCCAAGTACAGCATGTGGTCATTTCTCCCTCGATATTTGTATCTGCAGTTTAGCAAAACTGCCAACGCCTTCTTCCTGTTCATCACTATATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025428-'1-1,'1-0,2-1=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAATTCATGGTCCCTCACCCC
R:
ATAGTGATGAACAGGAAGAAGGCG
Band lengths:
170-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]