GgaEX7003965 @ galGal4
Exon Skipping
Gene
ENSGALG00000014236 | ATP8A1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:HGNC Symbol;Acc:HGNC:13531]
Coordinates
chr4:67757502-67770621:+
Coord C1 exon
chr4:67757502-67757550
Coord A exon
chr4:67768252-67768366
Coord C2 exon
chr4:67770522-67770621
Length
115 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCTTTTTTAACAGGCT
3' ss Score
11.4
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
ATGCCGGCGGTGCAGAAGACGGTGTCGGAGATCCGCTCCCGCGCGGAGG
Seq A exon
GCTATGAGAAGACAGATGATGTTTCAGAGAAAACTTCTCTGGCTGATCAAGAAGAATTGAGAACTATATTCATCAATCAGCCCCAGTTAACCAAATTCTGCAATAATCATGTCAG
Seq C2 exon
CACTGCAAAGTACAACATTATCACATTCCTGCCAAGGTTCCTTTATTCCCAGTTCAGAAGAGCTGCCAATGCATTTTTTCTTTTTATTGCACTACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014236-'2-2,'2-1,4-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.077 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000023022fB5300
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGCAGAAGACGGTGTC
R:
GCATTGGCAGCTCTTCTGAAC
Band lengths:
114-229
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]