MmuEX6017958 @ mm10
Exon Skipping
Gene
ENSMUSG00000037685 | Atp8a1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:MGI Symbol;Acc:MGI:1330848]
Coordinates
chr5:67813092-67847370:-
Coord C1 exon
chr5:67847162-67847370
Coord A exon
chr5:67814609-67814723
Coord C2 exon
chr5:67813092-67813191
Length
115 bp
Sequences
Splice sites
3' ss Seq
AAGAAGAGTGTCTCTTTCAGGTT
3' ss Score
4.12
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
CCAGTGCCCAGGCGGCTCCTGGCGGCGACGCTGCCCTGGGTGGGAGGCGCGGCCCCGCGGCAGCTGAGCCCTCTGCGCGGCGCAGCCAGCTCTCCCGCCCGCGCGGCGCCGTGACAGGTGCAGGGTCCCCGCCCGAGACCCACCTGCAGGGGCTGTCGAGATGCCGACCATGCGGAGGACAGTGTCGGAGATCCGCTCGCGCGCGGAAG
Seq A exon
GTTATGAGAAGACAGATGATGTTTCAGAGAAGACCTCGCTGGCAGATCAGGAGGAAGTGAGAACCATCTTCATCAACCAGCCTCAGCTGACAAAATTCTGCAACAACCACGTCAG
Seq C2 exon
TACTGCAAAATACAACGTGATCACATTCCTTCCGAGGTTCCTCTATTCTCAGTTCCGAAGAGCGGCTAATTCGTTCTTTCTCTTTATTGCCCTGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037685-'1-8,'1-7,8-8=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=0.097 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAGGTGCAGGGTCCC
R:
CTGGAGCAGGGCAATAAAGAGA
Band lengths:
198-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types