MmuEX6017958 @ mm9
Exon Skipping
Gene
ENSMUSG00000037685 | Atp8a1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:MGI Symbol;Acc:MGI:1330848]
Coordinates
chr5:68204331-68238671:-
Coord C1 exon
chr5:68238401-68238671
Coord A exon
chr5:68205848-68205962
Coord C2 exon
chr5:68204331-68204430
Length
115 bp
Sequences
Splice sites
3' ss Seq
AAGAAGAGTGTCTCTTTCAGGTT
3' ss Score
4.12
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
CACTGCGGGGAGACCTAGGCGGCTCTGCGGACGCAGCTCCTTCGCCGCCTTCCCCCTCCCGTCCAGTGCCCAGGCGGCTCCTGGCGGCGACGCTGCCCTGGGTGGGAGGCGCGGCCCCGCGGCAGCTGAGCCCTCTGCGCGGCGCAGCCAGCTCTCCCGCCCGCGCGGCGCCGTGACAGGTGCAGGGTCCCCGCCCGAGACCCACCTGCAGGGGCTGTCGAGATGCCGACCATGCGGAGGACAGTGTCGGAGATCCGCTCGCGCGCGGAAG
Seq A exon
GTTATGAGAAGACAGATGATGTTTCAGAGAAGACCTCGCTGGCAGATCAGGAGGAAGTGAGAACCATCTTCATCAACCAGCCTCAGCTGACAAAATTCTGCAACAACCACGTCAG
Seq C2 exon
TACTGCAAAATACAACGTGATCACATTCCTTCCGAGGTTCCTCTATTCTCAGTTCCGAAGAGCGGCTAATTCGTTCTTTCTCTTTATTGCCCTGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037685-'0-6,'0-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=0.114 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCCCCTCCCGTCCAG
R:
TCGGAAGGAATGTGATCACGT
Band lengths:
258-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: