BtaEX6030995 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011156 | ATP8A1
Description
probable phospholipid-transporting ATPase IA [Source:RefSeq peptide;Acc:NP_777263]
Coordinates
chr6:63094585-63128455:-
Coord C1 exon
chr6:63128138-63128455
Coord A exon
chr6:63096387-63096501
Coord C2 exon
chr6:63094585-63094684
Length
115 bp
Sequences
Splice sites
3' ss Seq
AGTCTCTCTCTCTCTCTAAGGTT
3' ss Score
9.13
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
CGGGGCCCGAGCTCCGCCCCTCGCCGAGCCGCCCCCTGCGCGGCTGCTGGCAGATCTCGCTGGGCTCTGCGGACACTGACACCTTCGTGGTCTCTTCCTCCTTCCGCAGGTGTGCGACGGCCTTTCCCGGCAGAGGCGCTGCCCTGGGTGGCCGGCAGGGCCCGCGCGGCTGCTGATCGCTCGGCGCAGGAAAGGCAGATTCCTCGCCCGCGCGGCGCCGTGACAGGTGCAGGGTCTGGTTTAAGGACCCACCTGCGGCGGCTGCTGCGATGCCCACCATGCGGAGGACCGTGTCGGAGATCCGGTCCCGAGCCGAGG
Seq A exon
GTTATGAGAAGACTGATGATGTTTCAGAGAAGACGTCACTGGCTGACCAGGAAGAAATAAGGACTATATTCATCAACCAGCCTCAGCTGACAAAATTCTGCAATAACCATGTCAG
Seq C2 exon
CACTGCAAAATACAACATAATCACATTCCTTCCAAGATTTCTCTACTCTCAGTTCAGAAGAGCCGCTAATTCATTTTTTCTCTTTATTGCACTGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011156-'0-2,'0-0,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.051 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGCGACGGCCTTTCC
R:
AGAGAAATCTTGGAAGGAATGTGA
Band lengths:
253-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]