DreEX0018700 @ danRer10
Exon Skipping
Gene
ENSDARG00000019208 | camsap1a
Description
calmodulin regulated spectrin-associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-060518-4]
Coordinates
chr21:4576211-4584337:-
Coord C1 exon
chr21:4584075-4584337
Coord A exon
chr21:4578078-4578239
Coord C2 exon
chr21:4576211-4576291
Length
162 bp
Sequences
Splice sites
3' ss Seq
TATATGTTGTGTGTGTATAGAGT
3' ss Score
5.64
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
AGCACATCCCGGAGGACCTGCGGGACCCGTTCTACACGGATCAGTACTGCGTGGAGCACATTAAGCCACCGGTGCTGTGTCTGCTGCTGTCCTCCGAGCTCTACTGCCGTGTGTGTGGACTCCTGCTGAAGGGCGATCAGGCGTCTGCGCTCAGCTCCCATCAGGCTGTTCTGCAGACGCTCGCTCGTCGAGGCATCAGTGTCAGAGAGCCTGACGACACGCCGGTGACACATGACGACCTCACGTCCACTCCCATTAAGATG
Seq A exon
AGTGCTCATATCCCGCTGATTGACGCTCTTATGATGGCCTATACGGTGGAGATGATGCCTATTGAGAGAGTGGTGGCGAGCGTTAAGCGGTTCTCCACCTTCTGCGCCTCTAAAGAGCTTCCCTTCGACATGGAGGATGCAGCGCTCTTCTGGATCAACAAG
Seq C2 exon
GTGGTTTTGAAGACGAGAGATCTCTCTGAGAAGGAGCTCAAGGTGAAACAGCCATTGATGGATTCGCCGTGCCATCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019208-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=0.000 C2=0.051
Domain overlap (PFAM):
C1:
NO
A:
PF0030726=CH=PU(5.7=16.7)
C2:
PF0030726=CH=FE(16.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTAAGCCACCGGTGCTGTG
R:
TGGCTGTTTCACCTTGAGCTC
Band lengths:
258-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]