DreEX0018719 @ danRer10
Exon Skipping
Gene
ENSDARG00000059965 | camsap2b
Description
calmodulin regulated spectrin-associated protein family, member 2b [Source:ZFIN;Acc:ZDB-GENE-070912-80]
Coordinates
chr2:45460381-45486384:+
Coord C1 exon
chr2:45460381-45460640
Coord A exon
chr2:45473135-45473296
Coord C2 exon
chr2:45486307-45486384
Length
162 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCTTGTCATTTTAGAGC
3' ss Score
10.07
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
ACTGTGTGCCAGTGGAGTTGGAGGACCCTTTTTACCGGGACCAGTATGATCAGGAGCATGTGAAGCCTCCTGTTGTGTCTCTGCTTCTTTCTGCTGAGTTGTATTGTCGTGCGGGGAGTCTGATTCTCAGGAGCGACGCAGCTAAACCTCTTTTGGGTCATAACGCCGTCATCCAGGCCCTCGCTCAGAAAGCCCTGTATGTCACTGACCAGGAGAGACTCGTGACTGAGAGAGACCTCTGCAAGACCCCTATACAGATG
Seq A exon
AGCTCTCACCTGGCAATGATTGACACGTTAATGATGGCCTACACGGTTGAAATGGTCAGCGTAGAGCGAGTTCTAAGCTGCATCCAGAAATTCACTCCTTTCCTTCCTGAGGAAGACTTTCCTTATGATGCTGAAGAGGCTGTGACAACATGGATCAACAAG
Seq C2 exon
GTAAATGAACATCTGAGAGAGATTTTGGCCTTGGAAAAGAATGCTAAAGGTGCAGACGAACCCTCCACTCTTCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059965-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.173
Domain overlap (PFAM):
C1:
NO
A:
PF0030726=CH=PU(6.2=16.7)
C2:
PF0030726=CH=FE(17.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCTGTTGTGTCTCTGC
R:
GGTTCGTCTGCACCTTTAGCA
Band lengths:
258-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]