GgaEX6043441 @ galGal3
Exon Skipping
Gene
ENSGALG00000002145 | CAMSAP2
Description
NA
Coordinates
chr8:1407290-1425589:-
Coord C1 exon
chr8:1425330-1425589
Coord A exon
chr8:1408016-1408177
Coord C2 exon
chr8:1407290-1407373
Length
162 bp
Sequences
Splice sites
3' ss Seq
ATTACTATTTCTCTTTGTAGAGT
3' ss Score
8.72
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
AAAATGTTCCGGAAGAACTGCGAGAGCCGTTTTACACAGACCAGTACGACCAGGAGCACATTAAACCACCTGTAGTTAACTTGCTGCTATCTGCAGAACTCTACTGTCGTGCTGGGAGCCTTATTCTGAAAAGTGATGCTGCAAAACCACTTTTAGGTCATGATGCTGTTATACAAGCTCTGGCACAGAAAGGCCTTTATGTCACTGACCAAGAAAAATTGGTGACTGAACGAGATCTTCACAAAAAACCCATTCAGATG
Seq A exon
AGTGCTCATTTGGCTATGATCGATACTCTTATGATGGCGTATACCGTAGAGATGGTCAGCGTTGAGAAAGTGATTGCGTGCACTCAGCAGTATTCGTCTTTCTTCCAAGCGACGGATCTACCTTATGACATAGAGGATGCTGTCATGTTCTGGATAAACAAG
Seq C2 exon
GTAAATGAACATTTGAAAGACATAATGGAACAGGAACAAAAACTTAAAGAGCATCACAGTGCAGAATCTGCAGGAGGTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002145-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.000 C2=0.452
Domain overlap (PFAM):
C1:
NO
A:
PF0030726=CH=PU(5.7=16.7)
C2:
PF0030726=CH=FE(17.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCTACTGTCGTGCTGGGA
R:
TCTGACCTCCTGCAGATTCTG
Band lengths:
246-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]