MmuEX0009007 @ mm9
Exon Skipping
Gene
ENSMUSG00000041570 | Camsap1l1
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:MGI Symbol;Acc:MGI:1922434]
Coordinates
chr1:138194319-138221573:-
Coord C1 exon
chr1:138221314-138221573
Coord A exon
chr1:138200872-138201033
Coord C2 exon
chr1:138194319-138194402
Length
162 bp
Sequences
Splice sites
3' ss Seq
TTGTGCTTTTCTATTTTCAGAGT
3' ss Score
10.74
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
AAAATGTGCCCGAGGAGCTTGGCGACCCATTTTACACAGACCAGTATGACCAGGAGCACATCAAACCCCCTGTCGTTAACCTGCTTCTGTCGGCCGAGCTGTACTGTCGCGCTGGAAGCCTCATCCTCAAGAGCGATGCTGCAAAGCCCCTCCTGGGCCATGATGCTGTGATCCAGGCATTAGCACAGAAAGGCCTGTATGTCACTGACCAGGAGAAACTGGTAACTGAAAGAGATCTCCACAAGAAACCCATACAGATG
Seq A exon
AGTGCACATTTGGCTATGATTGATACTCTAATGATGGCTTACACTGTAGAGATGATCAGCATAGAAAAAGTAATTGCATGTGCTCAACAGTATTCAGCTTTTTTTCAAGCCACAGATCTGCCCTATGATATTGAGGATGCTGTCATGTACTGGATGAATAAG
Seq C2 exon
GTAAATGAACACTTGAAAGACATAATGGAACAAGAACAAAAATCTAAAGAGCACCACCCAGCTGAAGCTCCAGGAGGCCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041570-'1-4,'1-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.000 C2=0.664
Domain overlap (PFAM):
C1:
NO
A:
PF0030726=CH=PU(5.5=16.7)
C2:
PF0030726=CH=FE(16.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTGTCGTTAACCTGCTTC
R:
CAGCTGGGTGGTGCTCTTTAG
Band lengths:
258-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: