RnoEX0016550 @ rn6
Exon Skipping
Gene
ENSRNOG00000008741 | Camsap2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:RGD Symbol;Acc:1310950]
Coordinates
chr13:53179717-53207823:-
Coord C1 exon
chr13:53207564-53207823
Coord A exon
chr13:53186001-53186162
Coord C2 exon
chr13:53179717-53179800
Length
162 bp
Sequences
Splice sites
3' ss Seq
TTGTGCTTTTCTCTTTTCAGAGT
3' ss Score
12.19
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
AAACTGTGCCAGAGGAACTTCGAGAACCATTTTACACAGATCAGTATGACCAGGAACACATCAAGCCCCCTGTCGTTAACCTGCTTCTGTCAGCGGAGCTGTACTGTCGTGCTGGCAGTCTCATCCTCAAGAGTGACGCTGCAAAGCCCCTCCTGGGCCACGATGCTGTAATCCAGGCATTAGCACACAAAGGCCTGTATGTCACTGACCAGGAAAAACTGGTAACTGAAAGAGACCTCCACAAGAAACCCATACAGATG
Seq A exon
AGTGCACACTTGGCCATGATCGATACTCTAATGATGGCTTACACTGTAGAGATGGTCAGCATAGAGAAAGTAATTGCATGTGCTCAACAGTATTCAGCTTTTTTTCAAGCCACAGATCTGCCCTATGATATCGAGGATGCTGTCATGTACTGGATAAATAAG
Seq C2 exon
GTAAATGAACACTTGAAAGACATAATGGAACAAGAACAAAAATCTAAAGAGCACCACACGGCTGAAGCTCCAGGAGGTCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008741_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.000 C2=0.571
Domain overlap (PFAM):
C1:
NO
A:
PF0030726=CH=PU(5.7=16.7)
C2:
PF0030726=CH=FE(17.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTGTCGTTAACCTGCTTC
R:
GCCGTGTGGTGCTCTTTAGAT
Band lengths:
256-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]