DreEX6099098 @ danRer10
Exon Skipping
Gene
ENSDARG00000062173 | camsap2a
Description
calmodulin regulated spectrin-associated protein family, member 2a [Source:ZFIN;Acc:ZDB-GENE-030131-3016]
Coordinates
chr22:22347603-22372491:-
Coord C1 exon
chr22:22372232-22372491
Coord A exon
chr22:22351088-22351249
Coord C2 exon
chr22:22347603-22347686
Length
162 bp
Sequences
Splice sites
3' ss Seq
TATTGATTTGTGGTTCACAGAGC
3' ss Score
7.11
5' ss Seq
AAGGTCATT
5' ss Score
4.32
Exon sequences
Seq C1 exon
ACAGTGTTCCTGAAGAGCTGAACGAGCCCTTCTACAAGGACCAGTATGAGCAGGAGCACCTGAAGCCTCCGGTGGCTGATCTGCTGCTGTCAGCGGAGCTCTACTGCAGAGCTGGAAGTCTGATCCTGAAGAGCGACGCTGTCAAACCTCTCCTGGGCCACGATGCGGTCATCCAGGCTCTGGCGCAGAAGGGCCTTTACGTCACCGACCAGGAGAGACTTGTGACTGAGAGAGACCTGCAGAAGAAACCTATTCAGATG
Seq A exon
AGCGCCCACCTGGCCATGATCGACACTCTGATGATGGCGTATACAGTGGAGACGGTGAGCGTGGAGAAGGTGATGGCCTGCATGCACCAATACTCCACCGATTATCCAGACGGAGACGTGCCCTACGACACAGAGGATGCCGTCACCAGCTGGATGAATAAG
Seq C2 exon
GTGAATGAATACTTGAAGGAAATCATAATGCAGGAGCAAAGGCGGATGGAGGCGCAGAACGCAGAGCCTGTTGAGAATCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062173-'1-4,'1-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.009 C2=0.435
Domain overlap (PFAM):
C1:
PF102214=DUF2151=PU(26.1=34.5)
A:
PF102214=DUF2151=FE(46.1=100)
C2:
PF102214=DUF2151=FE(23.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACTGCAGAGCTGGAAGTCT
R:
TGGATTCTCAACAGGCTCTGC
Band lengths:
242-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]