DreEX0020921 @ danRer10
Exon Skipping
Gene
ENSDARG00000058000 | cep350
Description
centrosomal protein 350 [Source:ZFIN;Acc:ZDB-GENE-030131-6975]
Coordinates
chr8:14565599-14566913:-
Coord C1 exon
chr8:14566817-14566913
Coord A exon
chr8:14566228-14566271
Coord C2 exon
chr8:14565599-14565713
Length
44 bp
Sequences
Splice sites
3' ss Seq
CATTGTTCCTCTCTTAATAGAGA
3' ss Score
8.03
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTTGGCATAGCGATGTGGAGTCGCTTGCGAAGTGAGGCGGGGCCACCAGCCTCTGTCCCTTCCCAGCCTCCCTTTGCTGGGCAAGACAACAGGAGAG
Seq A exon
AGATATCTCAAGCCTGGAATTGTATAAATCAGACCAAAGCTGCC
Seq C2 exon
TTGCGACACATTGAGAATCGTCTAGAGGCATCACCAGGCTCTGGAGTGCTTCTGGACTCCGTGCTAGACACAAAGAAGTCATCTGTGAGTGGCGGTCGGAAAATAAGCCGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058000-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.533 C2=0.923
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGCATAGCGATGTGGAGT
R:
CCTGGTGATGCCTCTAGACGA
Band lengths:
135-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]