MmuEX0010980 @ mm9
Exon Skipping
Gene
ENSMUSG00000033671 | Cep350
Description
centrosomal protein 350 [Source:MGI Symbol;Acc:MGI:1921331]
Coordinates
chr1:157806850-157809690:-
Coord C1 exon
chr1:157809605-157809690
Coord A exon
chr1:157808274-157808317
Coord C2 exon
chr1:157806850-157806961
Length
44 bp
Sequences
Splice sites
3' ss Seq
CTATCACTTTTTCTCAGTAGATG
3' ss Score
6.28
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTAAATTGGCAAGATGAGGAGCAGCAAGTCAAAAGAGGTGCCTTTACCAAATCCCAGGAACTCTCAGAGCAAGGAGACTATTCAAG
Seq A exon
ATGTAACCACATCATGGGATGCACTTTCTCAGACCAAGGCTGCT
Seq C2 exon
CTGAGACACATTGAGAACAAATTAGAAGTAACTCCTACAAGCACAGCTGTAATCGATTCTGTGATGGATACTAAGAAGTCTGCAAGTGCTACCCGAAAAATAAGTAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033671_CASSETTE4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.733 C2=0.873
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAGGAACTCTCAGAGCAA
R:
TTTCGGGTAGCACTTGCAGAC
Band lengths:
133-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: