HsaEX6035237 @ hg19
Exon Skipping
Gene
ENSG00000135837 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:24238]
Coordinates
chr1:179955304-179959756:+
Coord C1 exon
chr1:179955304-179955389
Coord A exon
chr1:179956378-179956421
Coord C2 exon
chr1:179959642-179959756
Length
44 bp
Sequences
Splice sites
3' ss Seq
ATCATTTTTTTTCCCAGCAGATA
3' ss Score
8.7
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTAAATTGGCAGGATGAGGAGCAGCAAATCAAAAGAGGTGCCTTTACCAAATCCAAGGAACTCTCAAAGCAAGGATACTGTTCAAG
Seq A exon
ATATAACCACATCGTGGGATGCACTTTCTCAAACCAAGGCTGCT
Seq C2 exon
CTGAGACACATTGAAAATAAATTAGAAGTAGCCCCTACAAGTACAGCTGTGTGTGATTCTGTCATGGATACCAAGAAGTCTTCTACAAGTGCTACTCGAAAAATAAGTAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135837-'2-6,'2-5,3-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.349 C2=0.792
Domain overlap (PFAM):
C1:
NO
A:
PF123953=DUF3658=FE(17.7=100)
C2:
PF123953=DUF3658=FE(48.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTGGCAGGATGAGGAGCAG
R:
ACAGCTGTACTTGTAGGGGCT
Band lengths:
133-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)