HsaEX6035237 @ hg38
Exon Skipping
Gene
ENSG00000135837 | CEP350
Description
centrosomal protein 350 [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr1:179986169-179990621:+
Coord C1 exon
chr1:179986169-179986254
Coord A exon
chr1:179987243-179987286
Coord C2 exon
chr1:179990507-179990621
Length
44 bp
Sequences
Splice sites
3' ss Seq
ATCATTTTTTTTCCCAGCAGATA
3' ss Score
8.7
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTAAATTGGCAGGATGAGGAGCAGCAAATCAAAAGAGGTGCCTTTACCAAATCCAAGGAACTCTCAAAGCAAGGATACTGTTCAAG
Seq A exon
ATATAACCACATCGTGGGATGCACTTTCTCAAACCAAGGCTGCT
Seq C2 exon
CTGAGACACATTGAAAATAAATTAGAAGTAGCCCCTACAAGTACAGCTGTGTGTGATTCTGTCATGGATACCAAGAAGTCTTCTACAAGTGCTACTCGAAAAATAAGTAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135837-'7-13,'7-11,8-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.980 A=0.330 C2=0.801
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTGGCAGGATGAGGAGCAG
R:
ACAGCTGTACTTGTAGGGGCT
Band lengths:
133-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains