RnoEX0020099 @ rn6
Exon Skipping
Gene
ENSRNOG00000003882 | Cep350
Description
centrosomal protein 350 [Source:RGD Symbol;Acc:621162]
Coordinates
chr13:73619373-73622211:-
Coord C1 exon
chr13:73622139-73622211
Coord A exon
chr13:73620570-73620616
Coord C2 exon
chr13:73619373-73619484
Length
47 bp
Sequences
Splice sites
3' ss Seq
TATATGTCGCTTTTTCTTAGTAG
3' ss Score
3.88
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATGAGGAGCAGCAAGTCAAAAGAGGTGCCTTTACCCAATCCAAGGAACTCTCAAAGCAAGGAGACTGTTCAAG
Seq A exon
TAGATGTAACCACATCATGGGATGCACTTTCTCAGACCAAGGCTGCT
Seq C2 exon
CTGAGACACATTGAGAACAAATTGGAAGTAGCGCCTACCAGTACAGCTGTGATCGATTCTGTGATGGATGCTAAGAAGTCCGCAAGTGCTACCCGGAAAATAAGTAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003882-'4-8,'4-5,5-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.489 C2=0.763
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGCCTTTACCCAATCCA
R:
GCACTTGCGGACTTCTTAGCA
Band lengths:
141-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]