GgaEX1014798 @ galGal4
Exon Skipping
Gene
ENSGALG00000003955 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr8:6032688-6035303:-
Coord C1 exon
chr8:6035218-6035303
Coord A exon
chr8:6033750-6033793
Coord C2 exon
chr8:6032688-6032802
Length
44 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTTCTGCTATACAAGATC
3' ss Score
3
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATAAATTGACATGATGTGGACCAACAAGTCCAGTGAGGTGCCTCAGCAGAATCCGAGGCATAACCAAGCCAAGGATTCAACCAGAG
Seq A exon
ATCCAGCTGCAGCATGGACTACTCTTTCTCAGACTAAGGCTGCT
Seq C2 exon
CTACGGCATATAGAGAACAAATTGGAAATAGCTCCCACCAGCACAGCTGTGTTTGATTCTGTCATGGATGCCAAGAAGCCCTCTGCTAGTACAAGCAGGAAAATAAGCAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003955-'0-3,'0-2,1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.933 C2=0.846
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAAGTCCAGTGAGGTGCC
R:
GGCTTCTTGGCATCCATGACA
Band lengths:
145-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]