DreEX0022773 @ danRer10
Exon Skipping
Gene
ENSDARG00000026165 | col11a1a
Description
collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
Coordinates
chr24:28697350-28697855:-
Coord C1 exon
chr24:28697820-28697855
Coord A exon
chr24:28697677-28697730
Coord C2 exon
chr24:28697350-28697596
Length
54 bp
Sequences
Splice sites
3' ss Seq
TGGAAATCTTCTTTCTGCAGGGT
3' ss Score
8.3
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GGTCCACAAGGGCCAAAGGGATCCAAGGGTTCAACT
Seq A exon
GGTCCTGCTGGTCAAAAAGGAGACACTGGCACGGTTGGACCTCCTGGGCCTCCT
Seq C2 exon
GGTCCTCCTGGTGAGGTCATCCAGCCTCTGCCCATCCACAGTCCCAAGAAATCCCGTCGCTCCATCGACATGCAGGCGGATGAAGCAGGCACCATGCTGGACTATGGAGAGGGCATGGAGGACATATTCAGCTCTCTCAATAATCTCAAACAGGACATCGAGCGCATGAAGTACCCCATGGGCACGCAAAACAACCCAGCACGAAGCTGTAAAGACCTTCAGCTCGCTCACCCTGAATTCCCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026165-'68-67,'68-66,69-67
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.831
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(18.3=100)
A:
PF0139113=Collagen=FE(28.3=100)
C2:
PF0139113=Collagen=PD(13.3=9.6),PF0141013=COLFI=PU(12.7=32.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAAGGGATCCAAGGGTTC
R:
CCATGCCCTCTCCATAGTCCA
Band lengths:
143-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]