GgaEX6044057 @ galGal3
Exon Skipping
Gene
ENSGALG00000005180 | COL11A1
Description
NA
Coordinates
chr8:12020212-12021449:+
Coord C1 exon
chr8:12020212-12020247
Coord A exon
chr8:12020356-12020409
Coord C2 exon
chr8:12021200-12021449
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTCATTACTTTATAGGGT
3' ss Score
9.54
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GGTCCCCAAGGTCCAAAAGGTTCCAAAGGATCCAGT
Seq A exon
GGTCCTGCTGGCCAAAAGGGTGACAGTGGTTTACCTGGCCCACCTGGTCCTCCA
Seq C2 exon
GGTCCTCCAGGTGAAGTAATTCAGCCACTGCCAATCCAGTCACCCAAAAAGACTAGAAGATCTCCCGATTACATGGTATCTGATGCTGGTGATAATATTCTGGATTATTCTGATGGCATGGAAGAGATCTTTGGTTCACTGAATTCACTGAAGCAAGACATTGAGTATATGAAGTATCCAATGGGCACTCAGAACAACCCAGCCCGAACCTGCAAAGACTTGCAGCTCTGCCACCCAGACTTCCCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005180-'65-66,'65-65,66-66=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.643
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(17.5=100)
A:
PF0139113=Collagen=FE(27.0=100)
C2:
PF0139113=Collagen=PD(12.7=9.5),PF0141013=COLFI=PU(12.7=32.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAAGGTCCAAAAGGTTCC
R:
TCCAGAATATTATCACCAGCATCAGA
Band lengths:
137-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]