DreEX0023341 @ danRer10
Exon Skipping
Gene
ENSDARG00000052061 | col4a6
Description
collagen, type IV, alpha 6 [Source:ZFIN;Acc:ZDB-GENE-101001-2]
Coordinates
chr7:50739230-50827185:-
Coord C1 exon
chr7:50827058-50827185
Coord A exon
chr7:50826849-50826894
Coord C2 exon
chr7:50739230-50739307
Length
46 bp
Sequences
Splice sites
3' ss Seq
ATTTGTTTATCTCTCCTTAGGAG
3' ss Score
9.86
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
TGGTCGAACCGCTCACCGGATTCTCAAATGAATAGGTCTGAAGCCATTAACCGAGGCTCACTGTGAAGACGAGGAGGATAGCCTACTTTACCTGCTGTTTCCTCAAAGCTTTGCAAAATGAGACTTTG
Seq A exon
GAGTTTTGTGTTACCCTTTGTCTTGTATGCGGTGTCTGCACAGGGG
Seq C2 exon
GGGTCAACACTCCAGGAGCCGTGTGCAGGCCGGGACTGCAGTGGACCGTGCCCGTGTTTTCCCTTAAAGGGTGGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052061_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.385
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=PU(3.1=7.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCACTGTGAAGACGAGGAG
R:
CCTTTAAGGGAAAACACGGGC
Band lengths:
143-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]