RnoEX0023329 @ rn6
Exon Skipping
Gene
ENSRNOG00000014851 | Col4a4
Description
collagen type IV alpha 4 chain [Source:RGD Symbol;Acc:1305355]
Coordinates
chr9:88336204-88343609:-
Coord C1 exon
chr9:88343438-88343609
Coord A exon
chr9:88341870-88341912
Coord C2 exon
chr9:88336204-88336281
Length
43 bp
Sequences
Splice sites
3' ss Seq
ATATTTTTGCTTTTCCATAGGTC
3' ss Score
12.02
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
CACATTGTAACACAGGGCACTGACTCCCAACTGTCCATGAGAATCTTCTGGGAGAGAGGAGAAGGCCGGAGGAGTATTTTGGGCACAGAGGTCATCCCTTGAAGGCACTAGTGCTCAAGGTCTTCATGAGGTGCTTTTTCAGATGGACCGAGTCCTACGGCACAGGCCCCTG
Seq A exon
GTCACTGATATTTATCCTCTTTACCATACAATATGAATATGGG
Seq C2 exon
AGCAGCAAGAAATATGGCAGCCCCTGTGGAGGAAGAAACTGCTCTGTCTGCCAGTGTTTCCCTGAAAAGGGATCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014851-'8-10,'8-8,10-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=PU(6.5=15.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGGGCACAGAGGTCATCC
R:
GCAGTTTCTTCCTCCACAGGG
Band lengths:
138-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]