DreEX0023380 @ danRer10
Exon Skipping
Gene
ENSDARG00000012593 | col5a1
Description
procollagen, type V, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-041105-6]
Coordinates
chr21:6782738-6783074:+
Coord C1 exon
chr21:6782738-6782791
Coord A exon
chr21:6782887-6782922
Coord C2 exon
chr21:6783021-6783074
Length
36 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTGCTTCTTTTCAGGGT
3' ss Score
12.02
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GGTATTGCTGGACCCTCTGGACCTATCGGACCCATTGGACCTCCTGGACTCCCG
Seq A exon
GGTCCTCCTGGTCCTAAAGGAGCTAAAGGATCCAGT
Seq C2 exon
GGTCAGACTGGCCCGAAGGGAGAATCTGGAATACCGGGACCTCCAGGACCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012593_MULTIEX1-37/38=36-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(17.9=66.7),PF0139113=Collagen=PU(30.4=94.4)
A:
PF0139113=Collagen=FE(19.4=100)
C2:
PF0139113=Collagen=FE(29.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTATTGCTGGACCCTCTGGA
R:
GGTCCTGGAGGTCCCGGTAT
Band lengths:
104-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]