DreEX0027779 @ danRer10
Exon Skipping
Gene
ENSDARG00000069937 | dnm2a
Description
dynamin 2a [Source:ZFIN;Acc:ZDB-GENE-050913-84]
Coordinates
chr3:50369369-50371226:+
Coord C1 exon
chr3:50369369-50369439
Coord A exon
chr3:50370918-50370971
Coord C2 exon
chr3:50371178-50371226
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCTCATGCCGTCACTTTCAGTCT
3' ss Score
7.67
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
GTTCTTTTGCTGATTGACACTGAGCTGTCATACATCAACACCAACCACGAGGACTTCATTGGATTTGCAAA
Seq A exon
TCTGGATCTCAGACGGTTGGATGACGGTACCATACCAGGGTACAGCAACAACAG
Seq C2 exon
TGCACAGCAAAGGAATATCGTCAACAAGAAGAGGGCCATTCCCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069937_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.105 C2=0.037
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(7.8=100)
A:
PF0103115=Dynamin_M=PD(2.7=42.1)
C2:
PF0103115=Dynamin_M=PD(4.1=70.6)
Main Inclusion Isoform:
ENSDART00000164536fB2365
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTTGCTGATTGACACTGAGCT
R:
ATGGCCCTCTTCTTGTTGACG
Band lengths:
108-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]