BtaEX6038063 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013362 | DNM2
Description
Bos taurus dynamin 2 (DNM2), mRNA. [Source:RefSeq mRNA;Acc:NM_001099369]
Coordinates
chr7:16498706-16506345:+
Coord C1 exon
chr7:16498706-16498776
Coord A exon
chr7:16501400-16501451
Coord C2 exon
chr7:16506232-16506345
Length
52 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTTTTTCGGTTTCAGCGC
3' ss Score
11.1
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
Exon sequences
Seq C1 exon
ATTCTTCTTCTGATTGACATTGAGCAGTCCTACATCAACACCAACCACGAGGACTTCATTGGATTTGCCAA
Seq A exon
CGCCCAGCAGAGGAGCACACAGCTGAATAAGAAGAGAGCCGTCCCCAACCAG
Seq C2 exon
GTGATCCGCAGGGGCTGGCTAACCATCAACAATATCAGCCTGATGAAGGGAGGCTCCAAGGAGTACTGGTTCGTGCTGACGGCCGAGTCACTGTCCTGGTACAAGGATGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013362-'15-21,'15-17,18-21=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.037 C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(7.8=100)
A:
PF0103115=Dynamin_M=PD(4.1=66.7)
C2:
PF0016924=PH=PU(35.6=97.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCAACACCAACCACGAGG
R:
TGTACCAGGACAGTGACTCGG
Band lengths:
143-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]