MmuEX6064381 @ mm10
Exon Skipping
Gene
ENSMUSG00000033335 | Dnm2
Description
dynamin 2 [Source:MGI Symbol;Acc:MGI:109547]
Coordinates
chr9:21485651-21490669:+
Coord C1 exon
chr9:21485651-21485721
Coord A exon
chr9:21489743-21489794
Coord C2 exon
chr9:21490658-21490669
Length
52 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTGCTTCTGTTACAGTGC
3' ss Score
9.92
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
Exon sequences
Seq C1 exon
ATTCTTCTTCTGATTGACATTGAGCAGTCGTACATCAACACAAACCATGAAGACTTCATTGGATTTGCCAA
Seq A exon
TGCCCAGCAGAGGAGCACGCAGCTGAACAAGAAGAGGGCCATACCCAATCAG
Seq C2 exon
GGGGAGATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033335-'28-32,'28-28,32-32
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.131 C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(13.1=100)
A:
PF0103115=Dynamin_M=PD(4.1=66.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types