DreEX0027771 @ danRer10
Exon Skipping
Gene
ENSDARG00000069937 | dnm2a
Description
dynamin 2a [Source:ZFIN;Acc:ZDB-GENE-050913-84]
Coordinates
chr3:50369369-50382104:+
Coord C1 exon
chr3:50369369-50369439
Coord A exon
chr3:50371178-50371226
Coord C2 exon
chr3:50381994-50382104
Length
49 bp
Sequences
Splice sites
3' ss Seq
TATGTTTCCGCCACCTGCAGTGC
3' ss Score
7.73
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GTTCTTTTGCTGATTGACACTGAGCTGTCATACATCAACACCAACCACGAGGACTTCATTGGATTTGCAAA
Seq A exon
TGCACAGCAAAGGAATATCGTCAACAAGAAGAGGGCCATTCCCAACCAG
Seq C2 exon
GTGATCCGTAAAGGCTGGTTAACCCTGAACATCAGCATCATGAAAGGAGGTTCAAAGGAGTACTGGTTCGTCCTGACTGCCGAATCGCTGTCCTGGTACAAAGACGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069937-'14-20,'14-16,17-20
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.037 C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(7.8=100)
A:
PF0103115=Dynamin_M=PD(4.1=70.6)
C2:
PF0016924=PH=PU(35.0=97.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCAACACCAACCACGAGG
R:
CGTCTTTGTACCAGGACAGCG
Band lengths:
146-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]